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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22494867_22495675_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22494867 - 22495675
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGAGT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
AEEAIGLSGESIIRCDEDEA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.4
44.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
84.7
0.78
0.9
90.3
22.7
Minor 5ss
33
-1.9
3.4
49.4
46.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
TRIM23
Ensembl Gene ID:
ENSAPLG00000009065
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009453
22488180 - 22504953
16774