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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22505020_22511262_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22505020 - 22511262
Intron Length:
6243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TCTGATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGACCT
Flanking Amino Acid:
PKQEHLLALKVMRLTKPTLF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.9
76.5
37.2
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
56.2
0.27
1.9
81.75
39.7

Associated Gene:

Gene:
TRAPPC13
Ensembl Gene ID:
ENSAPLG00000014926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025447
22504974 - 22528823
23850
ENSAPLT00000015586
22504974 - 22528823
23850