Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22507703_22511262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

22507703 - 22511262

Intron Length:

3560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTGATTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTTTATTGACCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

82.8

29.1

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

82.5

0.73

0.9

76.5

37.2

Minor 5ss

37.6

-1.4

3.1

54.1

Minor BPS

56.2

0.27

1.9

81.75

39.7

Associated Gene:

Gene:

TRAPPC13

Ensembl Gene ID:

ENSAPLG00000014926

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044069

22506915 - 22528595

21681