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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22514325_22514496_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22514325 - 22514496
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
AAAAATGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
HHEVKEIGTHILVCAVSYTT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
81.6
32.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.3
0.25
1.1
55.1
48.4
Minor 5ss
45.1
-0.5
3.4
69
41.9
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
TRAPPC13
Ensembl Gene ID:
ENSAPLG00000014926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044069
22506915 - 22528595
21681
ENSAPLT00000025447
22504974 - 22528823
23850
ENSAPLT00000015586
22504974 - 22528823
23850