Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22514570_22517168_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22514570 - 22517168

Intron Length:

2599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTAC

5'SS Class:

major

3'SS Sequence:

TCATTTCATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCATTTCATT

Flanking Amino Acid:

MYFRKFFKFQVLKPLDVKTK

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.1

64.6

35.9

Major BPS

100

1.24

0.5

100

Major PPT

79.4

0.66

0.9

77.9

35.4

Minor 5ss

43.2

-0.7

3.1

58.4

46.5

Minor BPS

53.6

0.19

1.9

78.07

38.6

Associated Gene:

Gene:

TRAPPC13

Ensembl Gene ID:

ENSAPLG00000014926

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025447

22504974 - 22528823

23850

ENSAPLT00000015586

22504974 - 22528823

23850

ENSAPLT00000044069

22506915 - 22528595

21681