Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22517214_22520363_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22517214 - 22520363

Intron Length:

3150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCCATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTTTTTATTT

Flanking Amino Acid:

DVKTKFYNAESDLSSVTDEV

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

73.2

0.52

0.9

72.7

32.8

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

64.2

0.52

1.5

78.46

Associated Gene:

Gene:

TRAPPC13

Ensembl Gene ID:

ENSAPLG00000014926

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044069

22506915 - 22528595

21681

ENSAPLT00000025447

22504974 - 22528823

23850