About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22517214_22522566_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22517214 - 22522566
Intron Length:
5353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGATTT
Flanking Amino Acid:
DVKTKFYNAETDEVFLEAQI
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.6
0.89
0.7
87.9
29.4
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
56.5
0.28
2
82.31
38.9

Associated Gene:

Gene:
TRAPPC13
Ensembl Gene ID:
ENSAPLG00000014926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015586
22504974 - 22528823
23850