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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22522701_22525135_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22522701 - 22525135
Intron Length:
2435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAGTGTTTAAAT
Flanking Amino Acid:
ELNTVETAGESESTFGSRTY
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
53.2
0.18
1.9
68.61
42.2

Associated Gene:

Gene:
TRAPPC13
Ensembl Gene ID:
ENSAPLG00000014926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044069
22506915 - 22528595
21681
ENSAPLT00000025447
22504974 - 22528823
23850
ENSAPLT00000015586
22504974 - 22528823
23850