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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22532729_22533703_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22532729 - 22533703
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTGTTCAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTACAA
Flanking Amino Acid:
GLSDLSSLIHAGQQFAQQIQ
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.7
0.49
1
66.5
38.6
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
56
0.19
1.9
73.42
38.3

Associated Gene:

Gene:
SGTB
Ensembl Gene ID:
ENSAPLG00000029083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034950
22532617 - 22550863
18247