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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22534071_22536060_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22534071 - 22536060
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTGTTATAATT
Flanking Amino Acid:
LINNPAFISMAASLMQNPQV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.3
0.64
0.9
71
39.4
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
53.6
0.19
1.7
72.64
38.9

Associated Gene:

Gene:
SGTB
Ensembl Gene ID:
ENSAPLG00000029083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034950
22532617 - 22550863
18247