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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22536350_22539208_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22536350 - 22539208
Intron Length:
2859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TATTTCACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
PKYSKAYGRMGLALTSVNKF
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
65
42.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
69.9
0.45
0.9
69.3
36.5
Minor 5ss
36.7
-1.5
3
39.2
46.1
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
SGTB
Ensembl Gene ID:
ENSAPLG00000029083
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034950
22532617 - 22550863
18247