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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22566144_22570330_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22566144 - 22570330
Intron Length:
4187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTATCCTATATT
Flanking Amino Acid:
DVFQKIVYLQQTCDLENVKP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.9
0.65
0.9
75
39.1
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
59.5
0.38
2
80.61
41.3

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041243
22552172 - 22588579
36408
ENSAPLT00000030343
22552172 - 22584023
31852
ENSAPLT00000001407
22552172 - 22778894
226723
ENSAPLT00000047866
22552172 - 22615401
63230