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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22566144_22571893_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22566144 - 22571893
Intron Length:
5750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
ATACCCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
DVFQKIVYLQEIKTMKKKLS
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
63.5
0.31
1
55.7
38.4
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022995
22552172 - 22615401
63230