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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22570439_22571893_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22570439 - 22571893
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAATATA
5'SS Class:
major
3'SS Sequence:
ATACCCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
GLHLPKEVQNEIKTMKKKLS
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
82.5
29.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
63.5
0.31
1
55.7
38.4
Minor 5ss
41.1
-1
3
55.3
42.3
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047866
22552172 - 22615401
63230
ENSAPLT00000041243
22552172 - 22588579
36408
ENSAPLT00000030343
22552172 - 22584023
31852
ENSAPLT00000001407
22552172 - 22778894
226723