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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22571997_22572924_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22571997 - 22572924
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTATTAAAT
Flanking Amino Acid:
TYLVFSKEELEGLPDDFINS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.5
0.64
0.8
73.4
36.9
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
65.7
0.57
1.7
83.28
36.9

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022995
22552172 - 22615401
63230
ENSAPLT00000047866
22552172 - 22615401
63230
ENSAPLT00000001407
22552172 - 22778894
226723
ENSAPLT00000041243
22552172 - 22588579
36408
ENSAPLT00000030343
22552172 - 22584023
31852