Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22578716_22581707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22578716 - 22581707

Intron Length:

2992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTGTTTAATA

Flanking Amino Acid:

GHVMHQICAQTDFARFSGTN

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

1.2

76.2

39.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

93.6

0.98

0.6

92.3

Minor 5ss

29.8

-2.3

3.1

41.5

44.9

Minor BPS

72.2

0.69

1.7

82.68

32.7

Associated Gene:

Gene:

NLN

Ensembl Gene ID:

ENSAPLG00000001243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041243

22552172 - 22588579

36408

ENSAPLT00000030343

22552172 - 22584023

31852

ENSAPLT00000022995

22552172 - 22615401

63230

ENSAPLT00000001407

22552172 - 22778894

226723

ENSAPLT00000047866

22552172 - 22615401

63230