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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22581895_22583233_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22581895 - 22583233
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTC
5'SS Class:
major
3'SS Sequence:
CTTATTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTCAATT
Flanking Amino Acid:
KLAASRLANTGLLTLRQIVL
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
72.3
37.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.7
0.4
1
67.9
37.8
Minor 5ss
48.9
-0.1
2.9
69.7
41.2
Minor BPS
59
0.36
1.7
76.82
40.3

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030343
22552172 - 22584023
31852
ENSAPLT00000022995
22552172 - 22615401
63230
ENSAPLT00000001407
22552172 - 22778894
226723
ENSAPLT00000047866
22552172 - 22615401
63230
ENSAPLT00000041243
22552172 - 22588579
36408