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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22583363_22583486_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
22583363 - 22583486
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCAG
5'SS Class:
major
3'SS Sequence:
CCAAACCACCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
ACAAACAAAACC
Flanking Amino Acid:
MEILGIPATPVVVCKRSCLL
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
63.9
42
Major BPS
60.3
0.26
1
65.5
28
Major PPT
47.1
-0.1
1
37.9
33.4
Minor 5ss
39
-1.2
2.9
49
47.2
Minor BPS
41.5
-0.6
2
48.63
40.5

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030343
22552172 - 22584023
31852