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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22583363_22583886_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22583363 - 22583886
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCAG
5'SS Class:
major
3'SS Sequence:
TCTACTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTAAGTTAATT
Flanking Amino Acid:
MEILGIPATPGTNMPATFGH
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
63.9
42
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.2
0.52
1
71.2
38.6
Minor 5ss
39
-1.2
2.9
49
47.2
Minor BPS
56.1
0.27
2.2
81.74
39.8

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041243
22552172 - 22588579
36408
ENSAPLT00000022995
22552172 - 22615401
63230
ENSAPLT00000001407
22552172 - 22778894
226723
ENSAPLT00000047866
22552172 - 22615401
63230