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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22584024_22586855_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22584024 - 22586855
Intron Length:
2832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TCTGCTTTACCT
Flanking Amino Acid:
FKEEGIMNPKAGMRYRNLIL
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.4
39.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.8
0.63
0.9
77.5
35.1
Minor 5ss
33.3
-1.9
3.5
49.7
46.5
Minor BPS
63.1
0.49
1.7
78.9
44

Associated Gene:

Gene:
NLN
Ensembl Gene ID:
ENSAPLG00000001243
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047866
22552172 - 22615401
63230
ENSAPLT00000041243
22552172 - 22588579
36408
ENSAPLT00000022995
22552172 - 22615401
63230