Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22586968_22588481_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22586968 - 22588481

Intron Length:

1514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGGGAC

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTGAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTCACTTGAAAC

Flanking Amino Acid:

RKPSQRAFLLTFKLRKAEDL

Intron Amino Acid Position:

692

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

61.1

38.2

Major BPS

84.4

0.85

34.5

Major PPT

84.3

0.77

0.9

86.8

24.4

Minor 5ss

30.8

-2.2

3.6

37.2

41.7

Minor BPS

54.8

0.13

1.6

65.3

Associated Gene:

Gene:

NLN

Ensembl Gene ID:

ENSAPLG00000001243

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041243

22552172 - 22588579

36408