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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22693555_22694314_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22693555 - 22694314
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGTATTTTATTT
Flanking Amino Acid:
VVEASVNPISKLPDGFSQLL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.7
0.8
0.7
81.6
29.9
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
50
0.08
1.6
65.49
39.5

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044861
22646503 - 22742389
95887
ENSAPLT00000043619
22646503 - 22742210
95708
ENSAPLT00000002853
22646503 - 22742210
95708