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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22712208_22713486_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22712208 - 22713486
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACTTCCTAGAAT
Flanking Amino Acid:
DGNRLTLIPGFIGTLKQLTY
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
88.5
0.87
0.6
85
22.7
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
57.1
0.3
1.8
74.37
42.5

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043619
22646503 - 22742210
95708
ENSAPLT00000002853
22646503 - 22742210
95708
ENSAPLT00000044861
22646503 - 22742389
95887