About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22715705_22716869_F


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
22715705 - 22716869

Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTTTGTGAA

5'SS Class:
major

3'SS Sequence:
TTCTAATTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTCTAAT

U12 Branch Point Sequence:
GTGTACTTAAAT

Flanking Amino Acid:
KLKVINLSDNRLKNLPFTFT

Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.9
0.61
1.1
71.4
33.7

Major BPS
94.5
1.11
0.6
92.2
14.6

Major PPT
83.2
0.75
0.8
77.3
35.6

Minor 5ss
34.4
-1.8
2.9
40.7
45.6

Minor BPS
66
0.58
1.6
79.51
41.8

Associated Gene:

Gene:
ERBIN

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22646503 - 22742210
95708

22646503 - 22742210
95708

22646503 - 22742389
95887