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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22716940_22717420_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22716940 - 22717420
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
GATTGTTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATTGTCTTAATG
Flanking Amino Acid:
LTAMWLSDNQSKPLIPLQKE
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.2
0.5
0.9
69.7
41.2
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
68.2
0.43
1.4
68.91
39.2

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043619
22646503 - 22742210
95708
ENSAPLT00000002853
22646503 - 22742210
95708
ENSAPLT00000044861
22646503 - 22742389
95887