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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22719658_22720628_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22719658 - 22720628
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTGTTACAC
Flanking Amino Acid:
DKDEREAPPREGNLKRYPTP
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
83
36.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.8
0.69
0.9
76.6
36.7
Minor 5ss
37.6
-1.4
2.7
45.2
42.4
Minor BPS
49
-0
2.3
70.75
40.8

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043619
22646503 - 22742210
95708
ENSAPLT00000002853
22646503 - 22742210
95708
ENSAPLT00000044861
22646503 - 22742389
95887