About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22736215_22737894_F


Intron Information:

Intron Rank:
22

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
22736215 - 22737894

Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAATTATC

5'SS Class:
strong_major

3'SS Sequence:
ATGTTTTATTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTCAT

U12 Branch Point Sequence:
ATGACATTAAGA

Flanking Amino Acid:
PDSLKKVAVQIPLTNGQMCQ

Intron Amino Acid Position:
1247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.2
0.9
0.9
87.2
27.3

Major BPS
92.2
1.05
0.7
91.9
19.6

Major PPT
79.7
0.67
0.9
78.2
39.8

Minor 5ss
40.4
-1.1
2.8
54.5
42.7

Minor BPS
50.8
0.02
1.9
63.87
42.1

Associated Gene:

Gene:
ERBIN

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22646503 - 22742389
95887

22646503 - 22742210
95708