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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22738105_22739105_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22738105 - 22739105
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTAACTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTCTTCTAACT
Flanking Amino Acid:
RQSHELVKQEIRVRIDKDPE
Intron Amino Acid Position:
1317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
62.2
0.27
1
59.4
41.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
58.7
0.35
1.7
77.41
39.2

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044861
22646503 - 22742389
95887
ENSAPLT00000002853
22646503 - 22742210
95708