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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22739199_22739850_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22739199 - 22739850
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTCAAAAAT
Flanking Amino Acid:
RGNPFRPEDDGIFVTRVQPE
Intron Amino Acid Position:
1348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.3
0.59
1
74.9
39
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
49.5
0.04
2
74.72
41.6

Associated Gene:

Gene:
ERBIN
Ensembl Gene ID:
ENSAPLG00000002753
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044861
22646503 - 22742389
95887
ENSAPLT00000043619
22646503 - 22742210
95708
ENSAPLT00000002853
22646503 - 22742210
95708