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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22783332_22786003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22783332 - 22786003
Intron Length:
2672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GGATCTTGAAGT
Flanking Amino Acid:
PIPTPTPLTTLGVSLGTLGA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
52
0.14
1.8
67.46
42.8

Associated Gene:

Gene:
SREK1
Ensembl Gene ID:
ENSAPLG00000003948
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004043
22766201 - 22789585
23385