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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22787457_22788067_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22787457 - 22788067
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
NGVMFGDRPLKINHSNNAIV
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.3
0.57
0.9
74.7
33.9
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
SREK1
Ensembl Gene ID:
ENSAPLG00000003948
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004043
22766201 - 22789585
23385