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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22788199_22789479_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22788199 - 22789479
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTGTTTATAATT
Flanking Amino Acid:
QSFISAAIEPGWLHSTSICN
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78
38.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.9
0.52
1
65.9
40.7
Minor 5ss
41.6
-0.9
3.2
56.7
47.6
Minor BPS
56.4
0.28
1.6
71.52
40.5

Associated Gene:

Gene:
SREK1
Ensembl Gene ID:
ENSAPLG00000003948
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004043
22766201 - 22789585
23385