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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22798184_22798947_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22798184 - 22798947
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAACA
Flanking Amino Acid:
RKSSRTPSPRRNKKEKKRER
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
74.7
0.56
1
71.1
37.8
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
68.8
0.59
1.9
84.69
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020460
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017843
22795211 - 22802312
7102