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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22819724_22823637_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22819724 - 22823637
Intron Length:
3914

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTATTAAAAT
Flanking Amino Acid:
PRNSSAIQDMTNWKPISKSL
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
88.3
26.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.2
0.84
0.7
81.4
30.6
Minor 5ss
28.2
-2.5
3.8
40.7
39.2
Minor BPS
53.6
0.19
1.9
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800