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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22823702_22825913_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22823702 - 22825913
Intron Length:
2212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAAACTTAAAAT
Flanking Amino Acid:
AHVICSLVFKRLKISCWPSV
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
81.7
34.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
50.4
0.09
1.8
68.23
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800