Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22828602_22829641_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22828602 - 22829641

Intron Length:

1040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

ACTGTGTTTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAC

U12 Branch Point Sequence:

CACACCCTAACT

Flanking Amino Acid:

YTDSSGKKWLAASVNSSTTS

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

79.6

34.4

Major BPS

63.2

0.33

63.6

30.5

Major PPT

77.2

0.61

0.9

73.1

41.5

Minor 5ss

36.8

-1.5

3.3

44.3

43.6

Minor BPS

56.7

0.29

1.8

70.78

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019269

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024173

22817072 - 22854871

37800