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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22829795_22830488_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22829795 - 22830488
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCCTC
5'SS Class:
major
3'SS Sequence:
TCTGAATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
GVTHFYSVEGVPRAGPTNVT
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.6
43.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.3
0.37
1.1
68.3
41.3
Minor 5ss
48.6
-0.1
2.7
68.3
42.7
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800