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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22830612_22831660_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22830612 - 22831660
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCAGTAAAA
Flanking Amino Acid:
VTTPAGNFTLDNLKPHKLYK
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
54.9
0.15
2.3
78.09
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800