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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22836996_22837150_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22836996 - 22837150
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTATGTTTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTCTCCCTATTT
Flanking Amino Acid:
IWSREILVPHKLMSKPRISY
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
73.2
0.52
1
66.2
43.9
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
53.2
0.18
2
73.33
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800