About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_22852247_22854736_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22852247 - 22854736
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTATGC
Flanking Amino Acid:
EDLNSLYFREEKMKNSLLAA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
86.5
0.82
0.7
84.4
30.6
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
47.9
-0.1
2.1
61.88
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019269
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024173
22817072 - 22854871
37800