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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23015770_23057792_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23015770 - 23057792
Intron Length:
42023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTGCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCTTTCTCCATT
Flanking Amino Acid:
QSAPSLTASLEGTPQKSHFS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.1
0.47
1
69.5
41.3
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
48.5
-0
2
66.82
44.9

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035376
22940434 - 23240930
300497
ENSAPLT00000032575
22999545 - 23238700
239156
ENSAPLT00000032119
22940434 - 23238700
298267