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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23077080_23112018_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23077080 - 23112018
Intron Length:
34939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTAACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTATTTTAACT
Flanking Amino Acid:
KELSLPRRGSFLTPRSLSPT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
75.7
0.89
1.1
86.62
32.6

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045179
22940434 - 23236373
295940