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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23077080_23163355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23077080 - 23163355
Intron Length:
86276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGCCTACAG
Flanking Amino Acid:
KELSLPRRGSFCRTSNRKSL
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.8
0.83
0.8
80.9
31.3
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
44.8
-0.5
2.4
61.25
46.2

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032119
22940434 - 23238700
298267
ENSAPLT00000019142
22999545 - 23238700
239156
ENSAPLT00000035376
22940434 - 23240930
300497
ENSAPLT00000004141
23035063 - 23236373
201311
ENSAPLT00000035260
23035063 - 23238700
203638
ENSAPLT00000032575
22999545 - 23238700
239156