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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23106443_23112018_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23106443 - 23112018
Intron Length:
5576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTATTTTAACT
Flanking Amino Acid:
ERLQIPGLTLDLTPRSLSPT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.5
0.8
0.8
82.4
34
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
75.7
0.89
1.1
86.62
32.6

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027183
23106396 - 23236373
129978