About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23173349_23176244_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23173349 - 23176244
Intron Length:
2896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTAAAC
Flanking Amino Acid:
SASAHFSFARSHGHRSDRTD
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.7
0.47
1
60.2
45.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
71.3
0.65
1.3
76.34
33.2

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017740
23111963 - 23238700
126738
ENSAPLT00000035260
23035063 - 23238700
203638
ENSAPLT00000032119
22940434 - 23238700
298267
ENSAPLT00000031225
23130837 - 23238700
107864
ENSAPLT00000027183
23106396 - 23236373
129978
ENSAPLT00000035376
22940434 - 23240930
300497