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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23173349_23176986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23173349 - 23176986
Intron Length:
3638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AGTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTGACTAAACT
Flanking Amino Acid:
SASAHFSFARRTDGRRWSLA
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
66.6
0.37
1
60.5
39.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
62.2
0.46
2
84.76
41.8

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045179
22940434 - 23236373
295940
ENSAPLT00000032575
22999545 - 23238700
239156
ENSAPLT00000019142
22999545 - 23238700
239156
ENSAPLT00000004141
23035063 - 23236373
201311