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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23236021_23240849_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23236021 - 23240849
Intron Length:
4829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTTGTTTACAG
Flanking Amino Acid:
ELPVASCKELRQ*
Intron Amino Acid Position:
2488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78.9
0.65
1
72.2
42.7
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
46.6
-0.3
2.1
56.87
44.7

Associated Gene:

Gene:
MAST4
Ensembl Gene ID:
ENSAPLG00000020182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035376
22940434 - 23240930
300497