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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23256711_23267546_F

Intron Information:

Intron Rank:
143387
Intron Class:
major
Intron Phase:
Intron Coordinates:
23256711 - 23267546
Intron Length:
10836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
GTATACGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TATGCTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
66.9
0.38
1
58.8
42.5
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
64.3
0.43
1.3
69.8
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027260
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031981
23256175 - 23270549
14375
ENSAPLT00000022753
23256587 - 23270308
13722
ENSAPLT00000021603
23256587 - 23269293
12707
ENSAPLT00000033996
23256175 - 23268624
12450