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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23267693_23267818_F

Intron Information:

Intron Rank:
143388
Intron Class:
major
Intron Phase:
Intron Coordinates:
23267693 - 23267818
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCCCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
68.6
36.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
32.1
-2
3.2
42.9
44.3
Minor BPS
46.5
-0.2
3.6
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027260
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031981
23256175 - 23270549
14375
ENSAPLT00000022753
23256587 - 23270308
13722
ENSAPLT00000021603
23256587 - 23269293
12707
ENSAPLT00000033996
23256175 - 23268624
12450