Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_23269223_23270264_F

Intron Information:

Intron Rank:

143393

Intron Class:

major

Intron Phase:

Intron Coordinates:

23269223 - 23270264

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTAATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTGTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.5

27.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.4

0.68

0.9

71.2

43.2

Minor 5ss

36.7

-1.5

2.8

41.8

38.8

Minor BPS

61.1

0.43

1.4

69.97

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027260

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022753

23256587 - 23270308

13722